Visitor of the Week: Kirsten Tracy

Meet Kirsten Tracy of the University of Vermont. As part of her first CSHL meeting participation, the postdoctoral fellow in The Stein/Lian Laboratory presented a poster entitled “Mitotically associated long non-coding RNA MANCR supports the metastatic breast cancer phenotype,” and her poster presentation went well. She received “a fair amount of interest…and fantastic feedback and new ideas for avenues to follow-up on.”

Furthermore, her overall meeting experience at the Biology of Cancer: Microenvironment & Metastasis Meeting is proving to be as productive as her poster presentation:

From friends and colleagues that have attended other CSHL meetings, I had heard that the atmosphere is scientifically intense yet still relaxed. I have found this to be absolutely true. There has been a lot of science to take in and ideas to discuss, but there has also been plenty of time to actually get to know the people you are having those discussions with.

What are your research interests? What are you working on?
My research is focused on identifying and characterizing long non-coding RNAs (lncRNAs) involved in the pathogenesis of breast cancer. I am particularly interested in lncRNAs that are specifically expressed in the triple negative breast cancer subtype.

How did you decide to make this the focus of your research?
Towards the end of my graduate work studying autophagy, it was clear that I wanted to move away from metabolism and had gotten interested in epigenetic regulation of cell fate. I had previously studied the functional effects of signaling transduction pathways in cancer metastasis, and really enjoyed the challenge of trying to learn how and why metastases form. Combining my interests, I decided to interrogate the epigenetic mechanisms that contribute to cancer progression and metastasis.

How did your scientific journey begin?
I was one of those kids that wanted to be some kind of -ologist - always trying to classify rocks I found, digging for dinosaur bones, or studying little critters in the yard. However, it wasn’t until I took a cancer biology course taught by Dr. Ruibao Ren at Brandeis University that I found my passion for cancer. The course inspired me to work as an undergraduate research assistant in Dr. Ren’s lab, and I’ve been at the bench ever since.

Was there something specific about the Biology of Cancer: Microenvironment & Metastasis Meeting that drew you to attend?
The broad range of topics related to cancer microenvironment and metastasis to be covered as well as the fantastic speakers list drew me to attend this meeting.

What is your key takeaway from the Meeting?
This meeting has really enforced how complex cancer is as a disease. So often, for ease, we perform our experiments on cell lines grown on a petri dish, then are surprised or disappointed when the cells behave differently if put into a more physiological context. There have been many fantastic presentations on the role that the tumor microenvironment plays in supporting tumor growth and progression. So the key takeaway for me has been the importance of studying tumor cells within the context of their environment (or as close as we can replicate).

What and/or how will you apply what you’ve learned from the meeting to your work?
At our poster session, I noticed that my neighbor had already done a newer technique that I have been getting ready to perform. She was able to provide some hints and modifications to the protocol to make it successful.

If someone curious in attending this meeting asked you for feedback or advice on it, what would you tell him/her?
I would definitely encourage them to attend this meeting especially if they want to get up to date on topics related to cancer biology or want feedback on their work from leaders in the field.

What do you like most about your time at CSHL?
I have really enjoyed taking in the sites around campus and learning some of the history of CSHL.

Thank you to Kirsten for being this week's featured visitor. To meet other featured scientists - and discover the wide range of science that takes part in a CSHL meeting or course - go here.

Visitor of the Week: Ahlam Alamri

Meet Ahlam Alamri of the University of Aberdeen (United Kingdom). The PhD student is a member of J. Martin Collinson’s lab who is presently at this week’s meeting on Stem Cell Biology. This is her first meeting at CSHL “and it is not going to be the last one.” Her maiden experience included a poster presentation on “Pax6-mutant mice do have active Limbal epithelial stem cells ....but do not respond to corneal injury” which also happens to also be Ahlam’s very first poster presentation. Her colleauges “came and asked questions starting informal chats,” making her experience an incredible one.

What are your research interests? What are you working on?
I am working with limbal epithelial stem cells and how they play a role in the maintenance of the cornea.  

How did you decide to make this the focus of your research?  
I became interested in stem cells after my master’s degree which was in hematology. As I was deciding what to do for my PhD, I was thinking about something that can be new and found that stem cells is the window of the future and stem cells can be studies in medical genetics, hematology, immunology...etc. So, many studies are going in labs to understand the significant role stem cells play in the maintenance of the eye. Prof. J. Martin Collinson is my inspiration and I am doing my PhD under his supervision. I can remember the first interview with him and the way he talked about his work. Working with limbal epithelial stem cells in mutant mice in vivo and in vitro has given me more experience and expanded my knowledge to figure out how ocular surface is maintained in health and disease.  

Was there something specific about the Stem Cell Biology Meeting that drew you to attend?
The number of stem cell topics to be covered in the meeting drew me to attend and it has been excellent.

What is your key takeaway from the Meeting?
Stem cells are an extremely valuable key to understanding the causes of many diseases.

If someone curious in attending this meeting asked you for feedback or advice on it, what would you tell him/her?
It is the one of the best meetings on stem cell and is one he/she should not miss it. It exceeded my expectations.

What do you like most about your time at CSHL?
The campus is incredible. The harbor is amazing and is a great area to walk around.  Also, the participants of the meeting come from many different countries but we share similar interests. I met new colleagues and have enjoyed their company and conversations.

Thank you to Ahlam for being this week's featured visitor. To meet other featured scientists - and discover the wide range of science that takes part in a CSHL meeting or course - go here.

Visitor of the Week: Bevin English

Meet Bevin English of the University of California, Davis. The postdoctoral fellow in Dr. Renée Tsolis’ lab is at CSHL for her first meeting: Microbial Pathogenesis & Host Response. Here is what she has to say of her first experience:

So far, this meeting is going more or less as I expected, which is great because I had pretty high expectations. I’ve been able to really get to know scientists in my field and hear about their latest results in a really beautiful setting.

What are your research interests? What are you working on?
Generally speaking, my research interest is host-pathogen interactions, with a particular focus on intracellular pathogens. Right now I’m investigating how different types of host cells respond to infection with Brucella abortus.

How did you decide to make this the focus of your research?
I became interested in intracellular pathogens specifically during graduate school, when I studied Histoplasma capsulatum under Dr. Anita Sil at UCSF. That was when I started to really appreciate the intricate interplay between the pathogen, which has evolved various strategies to manipulate the biology of the host cell in order to survive inside of it, and the host, which then has to evolve strategies to counteract the pathogen.

How did your scientific journey begin?
I’ve always been interested in science, even as a kid, and I became fascinated by infectious diseases in particular when I was in middle school. I had my first research experience as an undergraduate with Dr. Karen Hales at Davidson College, and after that first experience as an independent investigator--designing, executing, and interpreting my own experiments--I was hooked.

Was there something specific about the Microbial Pathogenesis & Host Response Meeting that drew you to attend?
There was a flyer advertising the meeting outside my lab, and when I saw the list of presenters, I was immediately impressed by the caliber. I chatted with my PI and colleagues who had attended the meeting in the past, and they had nothing but good things to say about it, so I decided to attend.

What is your key takeaway from the Meeting?
There are two sides to every story in host-pathogen interactions, and a lot of people, myself included, tend to stay in their comfort zone. But I’ve talked to a lot of people who emphasized that it’s important to go where the science takes you, and there are always people with more expertise who are willing to help you out.

What and/or how will you apply what you’ve learned from the meeting to your work?
My research project has shifted to immunometabolism, which I don’t have much experience in. Fortuitously, the second talk of this meeting was focused on metabolic reprogramming during infection and showed that a metabolite produced by the host affected bacterial pathogenesis by acting as a signal rather than a nutrient. It’s changing how I think about my results.

If someone curious in attending this meeting asked you for feedback or advice on it, what would you tell him/her?
I would definitely tell them to attend. In addition to fascinating presentations on various aspects of pathogenesis from a wide range of microbes, there are ample opportunities to interact with high quality scientists at all stages of their careers, allowing you to get input on both your science and your career development.

What do you like most about your time at CSHL?
I have really enjoyed catching up with friends.

Thank you to Bevin for being this week's featured visitor. To meet other featured scientists - and discover the wide range of science that takes part in a CSHL meeting or course - go here.

Visitor of the Week: Maroof Zafar

Meet Maroof Zafar of the University of Arkansas for Medical Sciences. The Pakistani national is a postdoctoral fellow working under the mentorship of Dr. Alicia Byrd in the Department of Biochemistry and Molecular Biology. Maroof is with us for the Eukaryotic DNA Replication & Genome Maintenance Meeting, and his initial participation included a fruitful poster presentation on “Human DNA helicase B protects stalled forks from degradation after replication stress.” As for his experience at his first CSHL meeting? Maroof found it to be “relaxed with opportunities to socialize with your peers while also benefiting from the cutting-edge research going on in your field.”

What are your research interests? What are you working on?
I am interested in studying how human cells repair damaged DNA to maintain genomic integrity. My work involves investigating the role of human DNA helicases in DNA replication and repair to further understand the mechanism of DNA replication and to identify potential targets for chemotherapeutics.  

How did you decide to make this the focus of your research?
I have always been fascinated by the complex cascade of protein networks and pathways that are involved in replicating and repairing our genomes. During graduate school, I focused on basic enzymology of human translesion polymerases and their role in chemoresistance. During those years, I grew fond of the mechanisms involved in DNA damage response pathways and wanted to explore this field further from a cellular level. 

How did your scientific journey begin?
I am from Pakistan and ever since I was in high school, I wanted to come to the United States for higher education and research. I wanted to make a difference in the community by exploring basic mechanisms that cause human diseases. As an undergraduate, I was fortunate enough to receive an undergraduate research fellowship to identify small molecule inhibitors of enzymes that cause cancer and chemoresistance. That summer research experience was the catalyst in my journey to further investigate the underlying causes of cancer.

Was there something specific about the Eukaryotic DNA Replication & Genome Maintenance Meeting that drew you to attend?
The CSHL meetings are very focused on a specific field and since I work on DNA replication and repair, it was a perfect meeting to attend to learn about the cutting-edge research going on in the field and to share my research with other scientists working on DNA replication and repair. I especially enjoyed the sessions on replication initiation, replication fork stalling and replisome structure.

What is your key takeaway from the meeting?
The Eukaryotic DNA Replication and Genome Maintenance Meeting is very well organized thus making it easier for the participants to make full use of their time while at CSHL. The key takeaways from the meeting are that the process of the DNA replication and repair is a very complex process--vital to human life--that involves a vast number of proteins and mechanisms; most of which are conversed from lower eukaryotes to higher eukaryotes. Although these mechanisms are well studied, there is still a lot of key questions that remain unanswered.

What and/or how will you apply what you’ve learned from the meeting to your work?
This meeting was really helpful in terms of making new collaborations and learning about the new and more sensitive techniques people are using to answer scientific questions. I am also looking at collaborating with researchers using electron microscopy to study different replication intermediates, and was fascinated to learn that cryo-em technology has developed significantly over the years making it easier to understand protein structure-function at a higher resolution.

If someone curious in attending this meeting asked you for feedback or advice on it, what would you tell him/her?
This meeting is an ideal place to meet people in your field. Make the most of that opportunity by networking, developing new collaborations and attending the career development session. Ask questions about other people’s research and be open to comments and suggestions regarding your own research. 

What do you like most about your time at CSHL?
CSHL is a very scenic campus quietly nestled next to a harbor and seems like an ideal place to do science. I am glad that I got the opportunity to experience life at CSHL, make new friends and develop valuable collaborations.

Thank you to Maroof for being this week's featured visitor. To meet other featured scientists - and discover the wide range of science that takes part in a CSHL meeting or course - go here.

Visitor of the Week: Emily Biernat

Meet Emily Biernat of Oakland University. The first year PhD student in Dr. Chhabi Govind’s lab is on campus taking part in her inaugural CSHL meeting, Mechanisms of Eukaryotic Transcription, as one of its 350+ poster presenters. Emily’s poster, entitled “The RSC complex coordinates with histone acetyltransferases to regulate chromatin structure and transcription genome-wide in Saccharomyces cerevisiae,” was visited by so many of her fellow meeting participants that “[her] throat went hoarse from speaking too much.” Her first experience of presenting a poster at an international meeting was productive, with “a few even [offering her] new ideas and strains to add to [the] future directions with the project.” As for her thoughts on her first CSHL Meeting? Here’s what she said:

I thought it would be a bunch of scientists getting together to strictly discuss their findings, but I discovered that this meeting is so much more than that. It’s an event where people from all walks of life can come together and make new friends, and share ideas that they are wildly passionate about. I will definitely be attending future meetings.

And we look forward to welcoming Emily again in future iterations of our Mechanisms of Eukaryotic Transcription meeting. Here is the rest of our interview.

What are your research interests; and how did you decide to make this the focus of your work?
My research involves studying how the RSC complex in budding yeast remodels the nucleosomes that package DNA into chromatin using MNase ChIP-seq, and subsequently how mutations in RSC affects chromatin remodeling, interactions with other transcription factors, and transcription. I knew I wanted to get into the field of either genetics or genomics ever since high school. I was curious about RNA interactions with other factors and epigenetic changes within populations. Studying chromatin remodeling allows me to investigate certain epigenetic roles involving histone dynamics and to study the effect this has on the production of various RNAs, such as snRNA. This focus allows me to study all of my scientific interests.

How did your scientific journey begin?
My scientific journey began when I was quite young, at about six years of age. My dad was into science himself, and bought me books on astronomy. I went through those books over and over again like how a kid always runs back to the ice cream truck for more. I always did well in school, particularly in the areas of math and science, so I was always motivated to learn as much as I could in school. I initially wanted to be an astronomer, but I figured out in my high school physics class that physics and astronomy were not the right paths for me. However, around the same time, I had a biology teacher who received her Master's in genetics, and was very passionate about the subject. I quickly became infatuated with genetics myself, and the rest was history.

Was there something specific about the Mechanisms of Eukaryotic Transcription Meeting that drew you to attend?
What drew me to the meeting were the vast amount of talks on RSC, SAGA, and how those factors initiate transcription in yeast. Also, world-renowned yeast genetics researchers such as Dr. Steven Hahn were attending the meeting, and I was eager to hear them speak.

What is your key takeaway from the meeting?
My key takeaway from the meeting is that the study of the mechanisms of transcription is a field more intricate than any new graduate could ever imagine before attending the meeting, and that there are hundreds, if not thousands, of smart, dedicated researchers all working to solve tiny pieces of the puzzle that is transcription.

What and/or how will you apply what you’ve learned from the meeting to your work?
I have learned about several methods that I would like to employ in my work. Cut and Run is much less time-consuming, less expensive, and more sensitive than ChIP. I would like to integrate cut and run into our lab’s workflow to use as a preliminary screening for mutants with the desired chromatin remodeling defects associated with RSC that we wish to explore further before we perform ChIP.

If someone curious in attending this meeting asked you for feedback or advice on it, what would you tell him/her?
I would tell the person that if they have a love for transcription or translation and wish to get into the field, that this is the meeting to attend.

What do you like most about your time at CSHL?
When I return home, the one thing that will stick with me the most is all of the new, friendly people that I had the pleasure of meeting. I finally got to put faces to the people I have emailed to request strains and protocols, and I must have made at least a dozen new friends so far. I cannot wait to come back for the next meeting!

Thank you to Emily for being this week's featured visitor. To meet other featured scientists - and discover the wide range of science that takes part in a CSHL meeting or course - go here.